Luke Research / Expert - Schulman Alan

A1 Journal article (refereed)

Rehman, Attiq ur; Davik, Jahn; Karisto, Petteri; Kaseva, Janne; Karhu, Saila; Rantanen, Marja; Strandén, Ismo; Hytönen, Timo; Schulman, Alan H.; Haikonen, Tuuli. 2025. A major QTL region associated with powdery mildew resistance in leaves and fruits of the reconstructed garden strawberry. Theoretical and applied genetics 138 4: 20 p.

EFSA Panel, Genetically Modified Organisms (GMO); Casacuberta, Josep; Barro, Francisco; Braeuning, Albert; Cubas, Pilar; de Maagd, Ruud; Epstein, Michelle M.; Frenzel, Thomas; Gallois, Jean‐Luc; Koning, Frits; Messéan, Antoine; Moreno, F. Javier; Nogué, Fabien; Savoini, Giovanni; Schulman, Alan H.; Tebbe, Christoph; Veromann, Eve; Ardizzone, Michele; De Santis, Giacomo; Federici, Silvia; Fernandez Dumont, Antonio; Gennaro, Andrea; Gómez Ruiz, José Ángel; Goumperis, Tilemachos; Grammatikou, Paschalina; Kagkli, Dafni Maria; Lenzi, Paolo; Lewandowska, Aleksandra; Martin Camargo, Ana; Neri, Franco Maria; Piffanelli, Pietro; Raffaello, Tommaso; Xiftou, Kyriaki. 2024. Assessment of genetically modified maize DP51291 (application GMFF‐2021‐0071). EFSA journal 22 11: 29 p.

Huang, Xin; Lindfors, Katri; Tanskanen, Jaakko; Kaukinen, Katri; Kaunisto, Helka; Kurki, Alma; Saavalainen, Päivi; Tanhuanpää, Pirjo; Tenhola-Roininen, Teija; Schulman, Alan H.; Sontag-Strohm, Tuula; Viitala, Sirja. 2024. A global view of oat immunogenicity for celiac disease, from genes to cellular response. Journal of cereal science 119: 8 p.

Paul, Maitry; Dalal, Ahan; Jääskeläinen, Marko; Moshelion, Menachem; Schulman, Alan H. 2024. Precision phenotyping of a barley diversity set reveals distinct drought response strategies. Frontiers in plant science 15: 15 p.

Rehman, Attiq ur; Iso‐Touru, Terhi; Junkers, Jakob; Rantanen, Marja; Karhu, Saila; Fischer, Daniel; Alsheikh, Muath; Hjeltnes, Stein Harald; Mezzetti, Bruno; Davik, Jahn; Schulman, Alan H.; Hytönen, Timo; Haikonen, Tuuli. 2024. Multi‐model GWAS reveals key loci for horticultural traits in reconstructed garden strawberry. Physiologia plantarum 176 4:

Appiah, Mercy; Abdulai, Issaka; Schulman, Alan H.; Moshelion, Menachem; Dewi, Elvira S.; Daszkowska-Golec, Agata; Bracho-Mujica, Gennady; Rötter, Reimund P. 2023. Drought response of water-conserving and non-conserving spring barley cultivars. Frontiers in Plant Science 14: 13 p.

Appiah, Mercy; Bracho-Mujica, Gennady; Ferreira, Nicole C.R.; Schulman, Alan H.; Rötter, Reimund P. 2023. Projected impacts of sowing date and cultivar choice on the timing of heat and drought stress in spring barley grown along a European transect. Field Crops Research 291: 16 p.

Paul, Maitry; Tanskanen, Jaakko; Jääskeläinen, Marko; Chang, Wei; Dalal, Ahan; Moshelion, Menachem; Schulman, Alan H. 2023. Drought and recovery in barley: key gene networks and retrotransposon response. Frontiers in Plant Science 14: 18 p.

Bretani, Gianluca; Shaaf, Salar; Tondelli, Alessandro; Cattivelli, Luigi; Delbono, Stefano; Waugh, Robbie; Thomas, William; Russell, Joanne; Bull, Hazel; Igartua, Ernesto; Casas, Ana M.; Gracia, Pilar; Rossi, Roberta; Schulman, Alan H.; Rossini, Laura. 2022. Multi-environment genome -wide association mapping of culm morphology traits in barley. Frontiers in Plant Science 13: 21 p.

Gela, Tadesse S.; Bruce, Margaret; Chang, Wei; Stoddard, Frederick L.; Schulman, Alan H.; Vandenberg, Albert; Khazaei, Hamid. 2022. Genomic regions associated with chocolate spot (Botrytis fabae Sard.) resistance in faba bean (Vicia faba L.). Molecular Breeding 42 6:

Kalendar, Ruslan; Shustov, Alexandr V.; Schulman, Alan H. 2021. Palindromic Sequence-Targeted (PST) PCR, Version 2: An Advanced Method for High-Throughput Targeted Gene Characterization and Transposon Display. Frontiers in plant science 12: 12 p.

Rabanus-Wallace, M. Timothy; Hackauf, Bernd; Mascher, Martin; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Baez, Mariana; Houben, Andreas; Mayer, Klaus F. X.; Guo, Liangliang; Poland, Jesse; Pozniak, Curtis J.; Walkowiak, Sean; Melonek, Joanna; Praz, Coraline R.; Schreiber, Mona; Budak, Hikmet; Heuberger, Matthias; Steuernagel, Burkhard; Wulff, Brande; Börner, Andreas; Byrns, Brook; Čížková, Jana; Fowler, D. Brian; Fritz, Allan; Himmelbach, Axel; Kaithakottil, Gemy; Keilwagen, Jens; Keller, Beat; Konkin, David; Larsen, Jamie; Li, Qiang; Myśków, Beata; Padmarasu, Sudharsan; Rawat, Nidhi; Sesiz, Uğur; Biyiklioglu-Kaya, Sezgi; Sharpe, Andy; Šimková, Hana; Small, Ian; Swarbreck, David; Toegelová, Helena; Tsvetkova, Natalia; Voylokov, Anatoly V.; Vrána, Jan; Bauer, Eva; Bolibok-Bragoszewska, Hanna; Doležel, Jaroslav; Hall, Anthony; Jia, Jizeng; Korzun, Viktor; Laroche, André; Ma, Xue-Feng; Ordon, Frank; Özkan, Hakan; Rakoczy-Trojanowska, Monika; Scholz, Uwe; Schulman, Alan H.; Siekmann, Dörthe; Stojałowski, Stefan; Tiwari, Vijay K.; Spannagl, Manuel; Stein, Nils. 2021. Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature genetics 53 4: 564-573.

Ahola, Hanna G.; Sontag-Strohm, Tuula S.; Schulman, Alan H.; Tanhuanpää, Pirjo; Viitala, Sirja; Huang, Xin. 2020. Immunochemical analysis of oat avenins in an oat cultivar and landrace collection. Journal of cereal science 95: 8 p.

Ghonaim, Marwa; Kalendar, Ruslan; Barakat, Hoda; Elsherif, Nahla; Ashry, Naglaa; Schulman, Alan H. 2020. High-throughput retrotransposon-based genetic diversity of maize germplasm assessment and analysis. Molecular biology reports 47 3: 1589-1603.

Kalendar, Ruslan; Raskina, Olga; Belyayev, Alexander; Schulman, Alan H. 2020. Long Tandem Arrays of Cassandra Retroelements and Their Role in Genome Dynamics in Plants. International journal of molecular sciences 21 8: 20 p.

Alam, Chaudhary Mashhood; Iqbal, Asif; Sharma, Anjana; Schulman, Alan H.; Ali, Safdar. 2019. Microsatellite Diversity, Complexity, and Host Range of Mycobacteriophage Genomes of the Siphoviridae Family. Frontiers in Genetics 10: 11 p.

Kalendar, Ruslan; Shustov, Alexandr V.; Seppänen, Mervi M.; Schulman, Alan H.; Stoddard, Frederick L. 2019. Palindromic sequence-targeted (PST) PCR: a rapid and efficient method for high-throughput gene characterization and genome walking. Scientific Reports 9 1: 11 p.

Khazaei, Hamid; Purves, Randy W.; Hughes, Jessa; Link, Wolfgang; O'Sullivan, Donal M.; Schulman, Alan H.; Björnsdotter, Emilie; Geu-Flores, Fernando; Nadzieja, Marcin; Andersen, Stig U.; Stougaard, Jens; Vandenberg, Albert; Stoddard, Frederick L. 2019. Eliminating vicine and convicine, the main anti-nutritional factors restricting faba bean usage. Trends in Food Science & Technology 91: 549-556.

Lonardi, Stefano; Muñoz‐Amatriaín, María; Liang, Qihua; Shu, Shengqiang; Wanamaker, Steve I.; Lo, Sassoum; Tanskanen, Jaakko; Schulman, Alan H.; Zhu, Tingting; Luo, Ming‐Cheng; Alhakami, Hind; Ounit, Rachid; Hasan, Abid Md.; Verdier, Jerome; Roberts, Philip A.; Santos, Jansen R.P.; Ndeve, Arsenio; Doležel, Jaroslav; Vrána, Jan; Hokin, Samuel A.; Farmer, Andrew D.; Cannon, Steven B.; Close, Timothy J. 2019. The genome of cowpea (Vigna unguiculata [L.] Walp.). The Plant Journal 98 5: 767-782.

Salojärvi, Jarkko; Smolander, Olli-Pekka; Nieminen, Kaisa; Rajaraman, Sitaram; Safronov, Omid; Safdari, Pezhman; Lamminmäki, Airi; Immanen, Juha; Lan, Tianying; Tanskanen, Jaakko; Rastas, Pasi; Amiryousefi, Ali; Jayaprakash, Balamuralikrishna; Kammonen, Juhana I; Hagqvist, Risto; Eswaran, Gugan; Ahonen, Viivi Helena; Serra, Juan Alonso; Asiegbu, Fred O; de Dios Barajas-Lopez, Juan; Blande, Daniel; Blokhina, Olga; Blomster, Tiina; Broholm, Suvi; Brosché, Mikael; Cui, Fuqiang; Dardick, Chris; Ehonen, Sanna E; Elomaa, Paula; Escamez, Sacha; Fagerstedt, Kurt V; Fujii, Hiroaki; Gauthier, Adrien; Gollan, Peter J; Halimaa, Pauliina; Heino, Pekka I; Himanen, Kristiina; Hollender, Courtney; Kangasjärvi, Saijaliisa; Kauppinen, Leila; Kelleher, Colin T; Kontunen-Soppela, Sari; Koskinen, J Patrik; Kovalchuk, Andriy; Kärenlampi, Sirpa O; Kärkönen, Anna K; Lim, Kean-Jin; Leppälä, Johanna; Macpherson, Lee; Mikola, Juha; Mouhu, Katriina; Mähönen, Ari Pekka; Niinemets, Ülo; Oksanen, Elina; Overmyer, Kirk; Palva, E Tapio; Pazouki, Leila; Pennanen, Ville; Puhakainen, Tuula; Poczai, Péter; Possen, Boy J H M; Punkkinen, Matleena; Rahikainen, Moona M; Rousi, Matti; Ruonala, Raili; van der Schoot, Christiaan; Shapiguzov, Alexey; Sierla, Maija; Sipilä, Timo P; Sutela, Suvi; Teeri, Teemu H; Tervahauta, Arja I; Vaattovaara, Aleksia; Vahala, Jorma; Vetchinnikova, Lidia; Welling, Annikki; Wrzaczek, Michael; Xu, Enjun; Paulin, Lars G; Schulman, Alan H; Lascoux, Martin; Albert, Victor A; Auvinen, Petri; Helariutta, Ykä; Kangasjärvi, Jaakko. 2019. Author Correction: Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nature Genetics 51 7: 1187-1189.

Tao, Fulu; Palosuo, Taru; Rötter, Reimund P.; Díaz-Ambrona, Carlos Gregorio Hernández; Inés Mínguez, M.; Semenov, Mikhail A.; Kersebaum, Kurt Christian; Cammarano, Davide; Specka, Xenia; Nendel, Claas; Srivastava, Amit Kumar; Ewert, Frank; Padovan, Gloria; Ferrise, Roberto; Martre, Pierre; Rodríguez, Lucía; Ruiz-Ramos, Margarita; Gaiser, Thomas; Höhn, Jukka G.; Salo, Tapio; Dibari, Camilla; Schulman, Alan H. 2019. Why do crop models diverge substantially in climate impact projections? A comprehensive analysis based on eight barley crop models. Agricultural and Forest Meteorology 281: 18 p.

Yoshida, Satoko; Kim, Seungill; Wafula, Eric K.; Tanskanen, Jaakko; Kim, Yong-Min; Honaas, Loren; Yang, Zhenzhen; Spallek, Thomas; Conn, Caitlin E.; Ichihashi, Yasunori; Cheong, Kyeongchae; Cui, Songkui; Der, Joshua P.; Gundlach, Heidrun; Jiao, Yuannian; Hori, Chiaki; Ishida, Juliane K.; Kasahara, Hiroyuki; Kiba, Takatoshi; Kim, Myung-Shin; Koo, Namjin; Laohavisit, Anuphon; Lee, Yong-Hwan; Lumba, Shelley; McCourt, Peter; Mortimer, Jenny C.; Mutuku, J. Musembi; Nomura, Takahito; Sasaki-Sekimoto, Yuko; Seto, Yoshiya; Wang, Yu; Wakatake, Takanori; Sakakibara, Hitoshi; Demura, Taku; Yamaguchi, Shinjiro; Yoneyama, Koichi; Manabe, Ri-ichiroh; Nelson, David C.; Schulman, Alan H.; Timko, Michael P.; dePamphilis, Claude W.; Choi, Doil; Shirasu, Ken. 2019. Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism. Current Biology 29 18: 3041-3052.e4.

Klymiuk, Valentina; Yaniv, Elitsur; Huang, Lin; Raats, Dina; Fatiukha, Andrii; Chen, Shisheng; Feng, Lihua; Frenkel, Zeev; Krugman, Tamar; Lidzbarsky, Gabriel; Chang, Wei; Jääskeläinen, Marko J.; Schudoma, Christian; Paulin, Lars; Laine, Pia; Bariana, Harbans; Sela, Hanan; Saleem, Kamran; Khadgi Sørensen, Chris; Hovmøller, Mogens S.; Distelfeld, Assaf; Chalhoub, Boulos; Dubcovsky, Jorge; Korol, Abraham B.; Schulman, Alan H.; Fahima, Tzion. 2018. Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family. Nature Communications 9 3735: 12 p.

Prade, Verena M.; Gundlach, Heidrun; Twardzick, Sven; Chapman, Brett; Tan, Cong; Langridge, Peter; Schulman, Alan H.; Stein, Nils; Waugh, Robbie; Zhang, Guoping; Platzer, Matthias; Li, Chengdao; Spannagi, Manuel; Mayer, Klaus F. X. 2018. The Pseudogenes of Barley. The Plant Journal 93 3: 502–514.

Vuorinen, Anssi L.; Kalendar, Ruslan; Fahima, Tzion; Korpelainen, Helena; Nevo, Eviatar; Schulman, Alan H. 2018. Retrotransposon-Based Genetic Diversity Assessment in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides). Agronomy 8 7:

Beier, S.; Himmelbach, A.; Colmsee, Chr.; Zhang, X.-Q.; Barrero, R. A.; Zhang, Q.; Li, L.; Bayer, M.; Bolser, D.; Taudien, St.; Groth, M.; Felder, M.; Hastie, A.; Simkova, H.; Stankova, H.; Vrana, J.; Chan, S.; Munoz-Amatriain, M.; Ounit, R.; Wanamaker, St.; Schmutzer, Th.; Aliyeva-Schnorr, L.; Grasso, St.; Tanskanen, Jaakko; Sampath, Dh.; Heavens, D.; Cao, S.; Chapman, Br.; Dai, F.; Han, Y.; Li, H.; Li, X.; Lin, Ch.; McCooke, J. K.; Tan, C.; Wang, S.; Yin, Sh.; Zhou, G.; Poland, J. A.; Bellgard, M. I.; Houben, A.; Dolezel, J.; Ayling, S.; Lonardi, St.; Langridge, P.; Muehlbauer, G. J.; Kersey, P.; Clark, M. D.; Caccamo, M.; Schulman, Alan H.; Platzer, M.; Close, T. J.; Hansson, M.; Zhang, G.; Braumann, I.; Li, Ch.; Waugh, R.; Scholz, U.; Stein, N.; Mascher, M. 2017. Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data 4: 24 p.

Kalendar, Ruslan; Belyayev, A.; Zachepilo, T.; Vaido, A.; Maidanyuk, Dm.; Schulman, Alan H.; Dyuzhikova, N. 2017. Copy-number variation of housekeeping gene rpl13a in rat strains selected for nervous system excitability. Molecular and Cellular Probes 33: 11-15.

Mascher, M.; Gundlach, H.; Himmelbach, A.; Beier, S.; Twardziok, Sv. O.; Wicker, Th.; Radchuk, V.; Dockter, Chr.; Hedley, P. E.; Russell, J.; Bayer, M.; Ramsay, L.; Liu, H.; Haberer, G.; Zhang, X.-Q.; Zhang, Q.; Barrero, R. A.; Li, Lin; Taudien, St.; Groth, M.; Felder, M.; Hastie, A.; Simkova, H.; Stankova, H.; Vrana, J.; Chan, S.; Munoz-Amatriain, M.; Ounit, R.; Wanamaker, St.; Bolser, D.; Colmsee, Chr.; Schmutzer, Th.; Aliyeva-Schnorr, L.; Grasso, St.; Tanskanen, Jaakko; Chailyan, A.; Sampath, Dh.; Heavens, D.; Clissold, L.; Cao, S.; Chapman, Br.; Dai, F.; Han, Y.; Li, H.; Li, X.; Lin, Ch.; McCooke, J. K.; Tan, C.; Wang, P.; Wang, S.; Yin, Sh.; Zhou, G.; Poland, J. A.; Bellgard, M. I.; Borisjuk, Lj.; Houben, A.; Dolezel, J.; Ayling, S.; Lonardi, St.; Kersey, P.; Langridge, P.; Muehlbauer, G. J.; Clark, M. D.; Caccamo, M.; Schulman, Alan H.; Mayer, Kl. F. X.; Platzer, M.; Close, T. J.; Scholz, U.; Hansson, M.; Zhang, G.; Braumann, I.; Spannagl, M.; Li, Ch.; Waugh, R.; Stein, N. 2017. A chromosome conformation capture ordered sequence of the barley genome. Nature 544: 427-433.

Salojärvi, J.; Smolander, O.-P.; Nieminen, K.; Rajaraman, S.; Safronov, O.; Safdari, P.; Lamminmäki, A.; Immanen, J.; Lan, T.; Tanskanen, Jaakko; Rastas, P.; Amiryousefi, A.; Jayaprakash, B.; Kammonen, J. I.; Hagqvist, Risto; Eswaran, G.; Ahonen, V. H.; Alonso Serra, J.; Asiegbu, Fr. O.; de Dios Barajas-Lopez, J.; Blande, D.; Blokhina, O.; Blomster, T.; Broholm, S.; Brosche, M.; Cui, F.; Dardick, Chr.; Ehonen, S. E.; Elomaa, P.; Escamez, S.; Fagerstedt, K. V.; Fujii, H.; Gauthier, A.; Gollan, P. J.; Halimaa, P.; Heino, P. I.; Himanen, Kr.; Hollender, C.; Kangasjärvi, S.; Kauppinen, L.; Kelleher, C. T.; Kontunen-Soppela, S.; Koskinen, J. P; Kovalchuk, A.; Kärenlampi, S. O.; Kärkönen, Anna K.; Lim, K.-J.; Leppälä, J.; Macpherson, L.; Mikola, J.; Mouhu, K.; Mähönen, A. P.; Niinemets, Ü.; Oksanen, E.; Overmyer, K.; Palva, E. T.; Pazouki, L.; Pennanen, V.; Puhakainen, T.; Poczai, P.; Possen, B. J. H. M.; Punkkinen, M.; Rahikainen, M. M.; Rousi, Matti; Ruonala, R.; van der Schoot, Chr.; Shapiguzov, A.; Sierla, M.; Sipilä, T. P.; Sutela, S.; Teeri, T. H.; Tervahauta, A. I.; Vaattovaara, A.; Vahala, J.; Vetchinnikova, L.; Welling, A.; Wrzaczek, M.; Xu, E.; Paulin, L. G.; Schulman, Alan H.; Lascoux, M.; Albert, V. A.; Auvinen, P.; Helariutta, Y.; Kangasjärvi, J. 2017. Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nature Genetics 49: 904-912.

Shang, Yi; Yang, Fei; Schulman, Alan H.; Zhu, Jinghuan; Jia, Yong; Wang, Junmei; Zhang, Xiao-Qi; Jia, Qiaojun; Hua, Wei; Yang, Jianming; Li, Chengdao. 2017. Gene deletion in barley mediated by LTR-retrotransposon BARE. Scientific Reports 7: 9 p.

Tao, Fulu; Rötter, Reimund P.; Palosuo, Taru; Diaz-Ambrona, C. G. H.; Minguez, M. Ines; Semenov, Mikhail A.; Kersebaum, Kurt Christian; Nendel, Claas; Cammarano, Davide; Hoffmann, Holger; Ewert, Frank; Dambreville, Anaelle; Martre, Pierre; Rodriguez, Lucia; Ruiz-Ramos, Margarita; Gaiser, Thomas; Höhn, Jukka G.; Salo, Tapio; Ferrise, Roberto; Bindi, Marco; Schulman, Alan H. 2017. Designing future barley ideotypes using a crop model ensemble. European Journal of Agronomy 82 Part A: 144-162.

Tao, Fulu; Rötter, Reimund P.; Palosuo, Taru; Diaz-Ambrona, C. G. H.; Minguez, M. Inés; Semenov, Mikhail A.; Kersebaum, Kurt Christian; Nendel, Claas; Specka, Xenia; Hoffmann, Holger; Ewert, Frank; Dambreville, Anaelle; Martre, Pierre; Rodriguez, Lucia; Ruiz-Ramos, Margarita; Gaiser, Thomas; Höhn, Jukka G.; Salo, Tapio; Ferrise, Roberto; Bindi, Marco; Cammarano, Davide; Schulman, Alan H. 2017. Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Global Change Biology 2017: 1291-1307.

Wicker, Thomas; Schulman, Alan H.; Tanskanen, Jaakko; Spannagi, Manuel; Twardziok, Sven; Mascher, Martin; Springer, Nathan M.; Li, Qing; Waugh, Robbie; Li, Chengdao; Zhang, Guoping; Stein, Nils; Mayer, Klaus F. X.; Gundlach, Heldrun. 2017. The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA 8: 22 p.

Tanhuanpää, Pirjo; Erkkilä, Maria; Kalendar, Ruslan; Schulman, Alan Howard; Manninen, Outi. 2016. Assessment of genetic diversity in Nordic timothy (Phleum pratense L.). Hereditas 153: 10 p.

Abdollahi Mandoulakani, Babak; Yaniv, Elitsur; Kalendar, Ruslan; Raats, Dina; Bariana, Harbans S.; Reza Bihamta, Mohammed; Schulman, Alan H. 2015. Development of IRAP- and REMAP-derived SCAR markers for marker-assisted selection of the stripe rust resistance gene Yr15 derived from wild emmer wheat. Theoretical and Applied Genetics 128 2: 211-219.

Doungous, Oumar; Kalendar, Ruslan; Adiobo, Amayana; Schulman, Alan H. 2015. Retrotransposon molecular markers resolve cocoyam (Xanthosoma sagittifolium) and taro (Colocasia esculenta) by type and variety. Euphytica 206 2: 541-554.

Yaniv, Elitsur; Raats, Dina; Ronin, Yefim; Korol, Abraham B.; Grama, Adriana; Bariana, Harbans; Dubcovsky, Jorge; Schulman, Alan H.; Fahima, Tzion. 2015. Evaluation of marker-assisted selection for the stripe rust resistance gene Yr15, introgressed from wild emmer wheat. Molecular Breeding 35 1: 12 p.

Ahola, Virpi; Lehtonen, Rainer; Somervuo, Panu; Salmela, Leena; Koskinen, Patrik; Rastas, Pasi; Välimäki, Niko; Paulin, Lars; Kvist, Jouni; Wahlberg, Niklas; Tanskanen, Jaakko; Hornett, Emily A.; Ferguson, Laura C.; Luo, Shiqi; Cao, Zijuan; de Jong, Maaike A.; Duplouy, Anne; Smolander, Olli-Pekka; Vogel, Heiko; McCoy, Rajiv C.; Qian, Kui; Chong, Wong Swee; Zhang, Qin; Ahmad, Freed; Haukka, Jani K.; Joshi, Aruj; Salojärvi, Jarkko; Wheat, Christopher W.; Grosse-Wilde, Ewald; Hughes, Daniel; Katainen, Riku; Pitkänen, Esa; Ylinen, Johannes; Waterhouse, Robert M.; Turunen, Mikko; Vähärautio, Anna; Ojanen, Sami P.; Schulman, Alan H.; Taipale, Minna; Lawson, Daniel; Ukkonen, Esko; Mäkinen, Veli; Goldsmith, Marian R.; HOlma, Liisa; Auvinen, Petri; Frilander, Mikko J.; Hanski, Ilkka. 2014. The Glanville fritillary genome retains ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nature Communications 5: 9 p.

Buchmann, Jan P; Löytynoja, Ari; Wicker, Thomas; Schulman, Alan. 2014. Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts. Mobile DNA 5 24: 15 p.

Moisy, Cédric; Schulman, Alan H.; Kalendar, Ruslan; Buchmann, Jan P.; Pelsy, Frédérique. 2014. The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years. Theoretical and Applied Genetics 127 5: 1223-1235.

Chang, Wei; Jääskeläinen, Marko; Li, Song-ping; Schulman, Alan H. 2013. BARE retrotransposons are translated and replicated via distinct RNA pools. PLoS ONE 8 8: 12 p.

Jääskeläinen, Marko; Chang, Wei; Moisy, Cédric; Schulman, Alan H. 2013. Retrotransposon BARE displays strong tissue-specific differences in expression. New Phytologist 200 4: 1000-1008.

Mascher, Martin; Muehlbauer, Gary J.; Rokhsar, Daniel S.; Chapman, Jarrod; Schmutz, Jeremy; Barry, Kerrie; Munoz-Amatriaín, María; Close, Timothy J.; Wise, Roger P.; Schulman, Alan H.; Himmelbach, Axel; Mayer, Klaus F.X.; Scholz, Uwe; Poland, Jesse A.; Stein, Nils; Waugh, Robbie. 2013. Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal 76 4: 718-727.

Schulman, Alan. 2013. Retrotransposon replication in plants. Current Opinion in Virology 3 6: 604-614.

Tondelli, Alessandro; Xu, Xin; Moragues, Marc; Sharma, Rajiv; Schnaithmann, Florian; Ingvardsen, Christina; Manninen, Outi; Comadran, Jordi; Russell, Joanne; Waugh, Robbie; Schulman, Alan H.; Pillen, Klaus; Rasmussen, Søren K.; Kilian, Benjamin; Cattivelli, Luigi; Thomas, William T. B.; Falvell, Andrew J. 2013. Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits. The Plant Genome 6 2: 14 p.

Trebichalský, Andrej; Kalendar, Ruslan; Schulman, Alan H.; Stratula, Olga; Gálová, Zdenka; Balážova, Želmíra; Chňapek, Milan. 2013. Detection of genetic relationships among spring and winter triticale (× Triticosecale Witt.) and rye cultivars (Secale cereale L.) by using retrotransposon-based markers. Czech Journal of Genetics and Plant Breeding 49 4: 171–174.

Feuillet, Catherine; Stein, N.; Rossini, L.; Praud, S.; Mayer, K.; Schulman, Alan; Eversole, K.; Appels, R. 2012. Integrating cereal genomics to support innovation in the Triticeae. Functional & Integrative Genomics 12 4: 573-583.

Mayer, Klaus F. X.; Waugh, Robbie; Brown, John W. S.; Schulman, Alan; Langridge, Peter; Platzer, Matthias; Fincher, Geoffrey B.; Muehlbauer, Gary J.; Sato, Kazuhiro; Close, Timothy J.; Wise, Roger P.; Stein, Nils; The International Barley Genome Sequencing Consortium. 2012. A physical, genetic and functional sequence assembly of the barley genome. Nature 491 7426: 711-716.

Sela, Hanan; Spiridon, Laurentiu N.; Petrescu, Andrei-Jose; Akerman, Martin; Mandel-Gutfreund, Yael; Nevo, Eviatar; Loutre, Caroline; Keller, Beat; Schulman, Alan H.; Fahima, Tzion. 2012. Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains. Molecular Plant Pathology 13 3: 276-287.

Kalendar, R.; Flavell, A. J.; Ellis, T. H. N.; Sjakste, T.; Moisy, Cedric; Schulman, Alan H. 2011. Analysis of plant diversity with retrotransposon-based molecular markers. Heredity 106 4: 520-530.

Kalendar, Ruslan; Lee, David; Schulman, Alan H. 2011. Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis. Genomics 98 2: 137-144.

Sela, Hanan; Loutre, Caroline; Keller, Beat; Schulman, Alan; Nevo, Eviatar; Korol, Abraham; Fahima, Tzion. 2011. Rapid linkage disequilibrium decay in the Lr10 gene in wild emmer wheat (Triticum dicoccoides) populations. Theoretical and applied genetics 122 1: 175-187.

Smýkal, P.; Bacová-Kerteszová, N.; Kalendar, R.; Corander, J.; Schulman, Alan H.; Pavelek, M. 2011. Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers. Theoretical and applied genetics 122 7: 1385-1397.

Tenhola-Roininen, Teija; Kalendar, Ruslan; Schulman, Alan H.; Tanhuanpää, Pirjo. 2011. A doubled haploid rye linkage map with a QTL affecting a-amylase activity. Journal of Applied Genetics 52 3: 299-304.

Belyayev, Alexander; Kalendar, Ruslan; Brodsky, Leonid; Nevo, Eviatar; Schulman, Alan H.; Raskina, Olga. 2010. Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mobile DNA 1:6: 16 p.

Kalendar, Ruslan; Antonius, Kristiina; Smýkal, Petr; Schulman, Alan H. 2010. iPBS: a universal method for DNA fingerprinting and retrotransposon isolation. Theoretical and applied genetics 121 8: 1419-1430.

Vogel J. P.; Garvin D. F.; Mockler T. C., et al.; Wicker, Thomas; Buchmann, Jan P.; Tanskanen, Jaakko; Schulman, Alan H.; Gundlach, Heidrum; Wright, Jonathan; Bevan, Michael; de Oliveira, Antonio Costa; da C. Maia, Luciano; Belknap, William; Gu, Yong Q.; Jiang, Ning; Lai, Jinsheng; Zhu, Liucun; Ma, Jianxin; Sun, Cheng; Pritham, Ellen. 2010. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463 7282: 763-768.

Schulte, Daniela; Close, Timothy J.; Graner, Andreas; Langridge, Peter; Matsumoto, Takashi; Muehlbauer, Gary; Sato, Kazuhiro; Schulman, Alan H.; Waugh, Robbie; Wise, Roger P.; Stein, Nils. 2009. The International Barley Sequiencing Consortium - At the Threshold of Efficient Access to the Barley Genome. Plant physiology 149 1: 142-147.

Vukich, M.; Schulman, Alan H.; Giordani, T.; Natali, L.; Kalendar, Ruslan; Cavallini, A. 2009. Genetic variability in sunflower (Helianthus annuus L.) and in the Helianthus genus as assessed by retrotransposon-based molecular markers. Theoretical and Applied Genetics 119 6: 1027-1038.

Chang, Wei; Schulman, Alan H. 2008. BARE retrotransposons produce multiple groups of rarely polyadenylated transcripts from two differentially regulated promoters. The Plant Journal 56 1: 40-50.

Kalendar, Ruslan; Tanskanen, Jaakko; Chang, Wei; Antonius, Kristiina; Sela, Hanan; Peleg, Ofer; Schulman, Alan H. 2008. Cassandra retrotransposons carry independently transcribed 5S RNA. Proceedings of the National Academy of Sciences of the United States of America 105 15: 5833-5838.

Ramallo, Elisenda; Kalendar, Ruslan; Schulman, Alan H.; Martinéz-Izquierdo, José A. 2008. Reme1, a copia retrotransposon in melon, is transcriptionally induced by UV light. Plant molecular biology 66 1-2: 137-150.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Kiviharju, Elina. 2008. The first doubled haploid linkage map for cultivated oat. Genome 51 8: 560-569.

Sabot, Francois; Schulman, Alan. 2007. Template switching can create complex LTR retrotransposon insertions in Triticeae genomes. BMC Genomics 8 247: 5 p.

Schulman, Alan. 2007. Molecular markers to assess genetic diversity. Euphytica 158 3: 313-321.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Kiviharju, Elina. 2007. A major gene for grain cadmium accumulation in oat (Avena sativa L.). Genome 50 6: 588-594.

Tanskanen, Jaakko; Sabot, Francois; Vicient, Carlos; Schulman, Alan. 2007. Life without GAG : The BARE-2 retrotransposon as a parasite's parasite. Gene 390 1-2: 166-174.

Wicker, Thomas; Sabot, Francois; Hua-Van, Aurélie; Bennetzen, Jeffrey; Capy, Pierre; Chalhoub, Boulos; Flavell, Andrew; Leroy, Philippe; Morgante, Michele; Panaud, Olivier; Paux, Etienne; SanMiguel, Phillip; Schulman, Alan. 2007. A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics 8 12: 973-982.

Antonius-Klemola, Kristiina; Kalendar, Ruslan; Schulman, Alan H. 2006. TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports. Theoretical and applied genetics 112 6: 999-1008.

Druka, Arnis; Muehlbauer, Gary; Druka, Ilze; Caldo, Rico; Baumann, Ute; Rostoks, Nils; Schreiber, Andreas; Wise, Roger; Close, Timothy; Kleinhofs, Andris; Graner, Andreas; Schulman, Alan; Langridge, Peter; Sato, Kazuhiro; Hayes, Patrick; McNicol, Jim; Marshall, David; Waugh, Robbie. 2006. An atlas of gene expression from seed to seed through barley development. Functional and integrative genomics 6 3: 202-211.

Gómez, Eva; Schulman, Alan; Martinez-Izquierdo, José; Vicient, Carlos. 2006. Integrase diversity and transcription of the maize retrotransposon Grande. Genome 49 5: 558-562.

Kalendar, Ruslan; Schulman, Alan. 2006. IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nature protocols 1 5: 2478-2484.

Manninen, Outi; Jalli, Marja; Kalendar, Ruslan; Schulman, Alan; Afanasenko, Olga; Robinson, Jonathan. 2006. Mapping of major spot-type and net-type net-blotch resistance genes in the Ethiopian barley lin CI 9819. Genome 49 12: 1564-1571.

Sabot, Francois; Kalendar, Ruslan; Jääskeläinen, Marko; Wei, Chang; Tanskanen, Jaakko; Schulman, Alan. 2006. Retrotransposons: metaparasites and agents of genome evolution. Israel Journal of Ecology and Evolution 52 3-4: 319-330.

Sabot, Francois; Schulman, Alan. 2006. Parasitism and the retrotransposon life cycle in plants : a hitchhiker's guide to the genome. Heredity 97 6: 381-388.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Laurila, Jaana; Schulman, Alan H.; Manninen, Outi; Kiviharju, Elina. 2006. Generation of SNP markers for short straw in oat (Avena sativa L.). Genome 49 3: 282-287.

Schulman, Alan; Kalendar, Russlan. 2005. A movable feast : diverse retrotransposons and their contribution to barley genome dynamics. Cytogenetic and genome research 110 1-4: 598-605.

Teo, Chee How; Tan, Siang Hee; Ho, Chai Ling; Faridah, Qamaruz Zaman; Othman, Yasmin Rofina; Heslop-Harrison, John Seymour; Kalendar, Ruslan; Schulman, Alan. 2005. Genome constitution and classification using retrotransposon-based markers in the orphan crop banana. Journal of Plant Biology, aikaisemmin The Korean Journal of Botany 48 1: 96-105.

Vicient, Carlos M.; Kalendar, Ruslan; Schulman, Alan H. 2005. Variability, recombination and mosaic evolution in the barley BARE-1 retrotransposon. Journal of Molecular Evolution 60 3: 275-291.

Kalendar, Ruslan; Vicient, Carlos M.; Peleg, Ofer; Anamthawat-Jonsson, Kesara; Bolshoy, Alexander; Schulman, Alan H. 2004. Large retrotransposon derivatives : abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics 166: 1437-1450.

Leigh, Fiona; Kalendar, Ruslan; Lea, Vincent; Lee, D.; Donini, Paolo; Schulman, Alan. 2003. Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques. Molecular genetics and genomics 269: 464-474.

Price, Zuzana; Schulman, Alan H.; Mays, Sean. 2003. Development of new marker methods : an example from oil palm. Plant genetic resources. Characterization and utilization 1 2/3: 103-113.

Baumel, Alex; Ainouche, Malika; Kalendar, Ruslan; Schulman, Alan H. 2002. Retrotransposons and Genomic Stability in Populations of the Young Allopolyploid Species Spartina anglica C.E. Hubbard (Poaceae). Molecular biology and evolution 19 8: 1218-1227.

Boyko, Elena; Kalender, Ruslan; Korzun, Victor; Fellers, John; Korol, Abraham; Schulman, Alan H.; Gill, Bikram S. 2002. A high-density cytogenetic map of Aegilops tauschii genome incorporating retrotransposons and defense-related genes: insights into cereal chromosome structure and function. Plant molecular biology 48: 767-790.

Tanhuanpää, Pirjo; Schulman, Alan. 2002. Mapping of genes affecting linolenic acid content in Brassica rapa ssp. oleifera. Molecular breeding 10 1-2: 51-62.

Vicient, Carlos; Jääskeläinen, Marko; Kalendar, Ruslan; Schulman, Alan. 2001. Active retrotransposons are a common feature of grass genomes. Plant physiology 125: 1283-1292.

Vicient, Carlos; Kalendar, Ruslan; Schulman, Alan. 2001. Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants. Genome research 11 12: 2041-2049.

Kalendar, Ruslan; Tanskanen, Jaakko; Immonen, Sirkka; Nevo, Evitar; Schulman, Alan. 2000. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proceedings of the national academy of sciences of the United States of America 97: 6603-6607.

Manninen, Outi; Kalendar, Ruslan; Robinson, Jonathan; Schulman, Alan. 2000. Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley. Molecular and general genetics 264: 325-334.

Schulman, Alan; Ahokas, Hannu. 1990. A novel shrunken endosperm mutant of barley. Physiologia Plantarum 78: 583-589.

A2 Review article in a scientific journal (refereed)

Thorogood, Rose; Mustonen, Ville; Aleixo, Alexandre; Aphalo, Pedro J.; Asiegbu, Fred O.; Cabeza, Mar; Cairns, Johannes; Candolin, Ulrika; Cardoso, Pedro; Eronen, Jussi T.; Hällfors, Maria; Hovatta, Iiris; Juslén, Aino; Kovalchuk, Andriy; Kulmuni, Jonna; Kuula, Liisa; Mäkipää, Raisa; Ovaskainen, Otso; Pesonen, Anu-Katriina; Primmer, Craig R.; Saastamoinen, Marjo; Schulman, Alan H.; Schulman, Leif; Strona, Giovanni; Vanhatalo, Jarno. 2023. Understanding and applying biological resilience, from genes to ecosystems. npj Biodiversity 2 1: 13 p.

Khazaei, Hamid; O'Sullivan, Donal M.; Stoddard, Frederick L.; Adhikari, Kedar N.; Paull, Jeffrey G.; Schulman, Alan H.; Andersen, Stig U.; Vandenberg, Albert. 2021. Recent advances in faba bean genetic and genomic tools for crop improvement. Legume science 3 3: 13 p.

Schulman, Alan H.; Oksman‐Caldentey, Kirsi‐Marja; Teeri, Teemu H. 2019. European Court of Justice delivers no justice to Europe on genome‐edited crops. Plant Biotechnology Journal:

Falk, Anders; Schulman, Alan; Rasmussen, Søren; Jansson, Christer. 2001. Barley Mutagenesis. In: Progress in Botany. Progress in Botany 62: 33-50.

A3 Part of a book or another research book (refereed)

Kalendar, Ruslan; Kospanova, Dana; Schulman, Alan H. 2021. Transposon-Based Tagging In Silico Using FastPCR Software. In: Plant Transposable Elements. Methods in molecular biology: 245-256.

Schulman, Alan H. 2016. Genome size and the role of transposable elements. In: Genetics and genomics of Brachypodium / Ed. John P. Vogel. Plant Genetics and Genomics: Crops and Models 18: p. 81-106.

Budak, Hikmet; Hernandez, Pilar; Schulman, Alan. 2014. Analysis and exploitation of cereal genomes with the aid of Brachypodium. In: Genomics of plant genetic resources. Volume 1 : Managing, sequencing and mining genetic resources / Editors Roberto Tuberosa, Andreas Graner, Emile Frison. Genomics of Plant Genetic Resources: p. 585-613.

Kalendar, Ruslan; Lee, David; Schulman, Alan H. 2014. FastPCR Software for PCR, In Silico PCR, and Oligonucleotide Assembly and Analysis. In: DNA Cloning and Assembly Methods / Valla, Svein; Lale, Rahmi (Eds.). Methods in Molecular Biology 1116: 271-302.

Kalendar, Ruslan; Schulman, Alan. 2014. Transposon-based tagging : IRAP, REMAP, and iPBS. In: Molecular plant taxonomy : methods and protocols / Edited by Pascale Besse. Methods in Molecular Biology 1115: p. 233-255.

Raats, Dina; Yaniv, Elitsur; Distelfeld, Assaf; Ben-David, Roi; Shanir, Johanna; Bocharova, Valery; Schulman, Alan; Fahima, Tzion. 2014. Application of CAPS markers for genomic studies in wild emmer wheat. In: Cleaved Amplified Polymorphic Sequences (CAPS) Markers in Plant Biology / Editor: Yuri Shavrukov. NOVA Publishers. p. 31-60.

Schulman, Alan H.; Wicker, Thomas. 2013. A field guide to transposable elements. In: Plant transposons and genome dynamics in evolution / Nina V. Fedoroff (Editor). Wiley-Blackwell. p. 15-40.

Schulman, Alan H. 2012. Hitching a ride : nonautonomous retrotransposons and parasitism as a lifestyle. In: Plant transposable elements : impact on genome structure and function / Editors Marie-Angèle Grandbastien, Josep M. Casacuberta. Topics in Current Genetics 24: 71-88.

Schulman, Alan H.; Flavell, Andrew J.; Paux, Etienne; Ellis, T. H. Noel. 2012. The application of LTR retrotransposons as molecular markers in plants. In: Mobile genetic elements : protocols and genomic applications / ed. Yves Bigot. Methods in Molecular Biology 859: 115-153.

Kalendar, Ruslan; Lee, David; Schulman, Alan H. 2009. FastPCR software for PCR primer and probe design and repeat search. In: Focus on Bioinformatics / Mansour, A. (Ed). Genes, Genomes and Genomics 3 Special Issue 1: 1-14.

Schulman, Alan; Flavell, Andrew; Ellis, T H Noel. 2004. The application of LTR retrotransposons as molecular markers in plants. In: Mobile genetic elements and their application in genomics / MillerW.J.CapyP. (editors). Humana Press. p. 145-173.

Schulman, Alan H.; Gupta, Pushpendra K.; Varshney, Rajeev K. 2004. Organization of retrotransposons and microsatellites in cereal genomes. In: Cereal genomics / GuptaP.K.VarshneyR.K. (editors). Kluwer Academic Press. p. 83-118.

Schulman, Alan. 2002. Transgenic plants as producers of modified starch and other carbohydrates. In: Plant Biotechnology and Transgenic Plants / eds. Oksman-CaldenteyK.-M.BarzW. Marcel Dekker. p. 255-282.

B1 Article in a scientific magazine (non-refereed)

EFSA Panel, Genetically Modified Organisms (GMO); Casacuberta, Josep; Barro, Francisco; Braeuning, Albert; Cubas, Pilar; de Maagd, Ruud; Epstein, Michelle M.; Frenzel, Thomas; Gallois, Jean‐Luc; Koning, Frits; Messéan, Antoine; Moreno, F. Javier; Nogué, Fabien; Savoini, Giovanni; Schulman, Alan H.; Tebbe, Christoph; Veromann, Eve; Gennaro, Andrea; Gil Gonzalez, Aina Belen; Gómez Ruiz, José Ángel; Goumperis, Tilemachos; Kagkli, Dafni Maria; Lenzi, Paolo; Lewandowska, Aleksandra; Piffanelli, Pietro; Schoonjans, Reinhilde. 2024. Assessment of soy leghemoglobin produced from genetically modified Komagataella phaffii, under Regulation (EC) No 1829/2003 (application EFSA‐GMO‐NL‐2019‐162). EFSA journal 22 11: 15 p.

SEFSA Panel, Genetically Modified Organisms (GMO); Casacuberta, Josep; Barro, Francisco; Braeuning, Albert; Cubas, Pilar; de Maagd, Ruud; Epstein, Michelle M.; Frenzel, Thomas; Gallois, Jean‐Luc; Koning, Frits; Messéan, Antoine; Moreno, F. Javier; Nogué, Fabien; Savoini, Giovanni; Schulman, Alan H.; Tebbe, Christoph; Veromann, Eve; Ardizzone, Michele; Dumont, Antonio Fernandez; Ferrari, Arianna; Gonzalez, Aina Belen Gil; Gómez Ruiz, José Ángel; Goumperis, Tilemachos. 2024. Statement complementing the EFSA Scientific Opinion on application (EFSA‐GMO‐NL‐2015‐126) for authorisation of food and feed containing, consisting of and produced from genetically modified soybean MON 87705 × MON 87708 × MON 89788. EFSA journal 22 10: 9 p.

Björnsdotter, Emilie; Nadzieja, Marcin; Chang, Wei; Escobar-Herrera, Leandro; Mancinotti, Davide; Angra, Deepti; Xia, Xinxing; Tacke, Rebecca; Khazaei, Hamid; Crocoll, Christoph; Vandenberg, Albert; Link, Wolfgang; Stoddard, Frederick L.; O’Sullivan, Donal M.; Stougaard, Jens; Schulman, Alan H.; Andersen, Stig U.; Geu-Flores, Fernando. 2021. VC1 catalyses a key step in the biosynthesis of vicine in faba bean. Nature plants 7 7: 923-931.

Wicker, Thomas; Sabot, François; Hua-Van, Aurélie; Bennetzen, Jeffrey L.; Capy, Pierre; Chalhoub, Boulos; Flavell, Andrew; Leroy, Philippe; Morgante, Michele; Panaud, Olivier; Paux, Etienne; SanMiguel, Phillip; Schulman, Alan H. 2009. Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny. Nature Reviews Genetics 10 4: 276.

Wicker, Thomas; Sabot, François; Hua-Van, Aurélie; Bennetzen, Jeffrey L.; Capy, Pierre; Chalhoub, Boulos; Flavell, Andrew; Leroy, Philippe; Morgante, Michele; Panaud, Olivier; Paux, Elienne; SanMiguel, Phillip; Schulman, Alan H. 2008. Reply: A universal classification of eukaryotic transposable elements implemented in Repbase. Nature Reviews Genetics 9 5: 414.

Kiviharju, Elina; Ritala, Anneli; Tanhuanpää, Pirjo; Manninen, Outi; Schulman, Alan; Pietilä, Leena. 2007. Biotekniikan mahdollisuudet kauranjalostuksessa. In: Biotekniikka kauran jalostuksessa : Uudet menetelmät laadun parantamiseksi. Maa- ja elintarviketalous 99: s. 59-75.

Ritala, Anneli; Suortti, Tapani; Kalendar, Ruslan; Salmenkallio-Marttila, Marjatta; Oksman-Caldentey, Kirsi-Marja; Schulman, Alan; Nuutila, Anna Maria. 2007. Geeninsiirtojen hyödyntäminen jalostuksessa. In: Biotekniikka kauran jalostuksessa : Uudet menetelmät laadun parantamiseksi. Maa- ja elintarviketalous 99: s. 34-58.

Tanhuanpää, Pirjo; Manninen, Outi; Schulman, Alan; Kalendar, Ruslan; Hietaniemi, Veli; Eurola, Merja; Pietilä, Leena; Kiviharju, Elina. 2007. Kauran laatuominaisuuksien geenikartoitus. In: Biotekniikka kauran jalostuksessa : Uudet menetelmät laadun parantamiseksi / Elina Kiviharju, Anneli Ritala, Alan Schulman, Leena Pietilä ja Pirjo Tanhuanpää (toim.). Maa- ja elintarviketalous 99: s. 8-33.

Ritala, Anneli; Salmenkallio-Marttila, Marjatta; Oksman-Caldentey, Kirsi-Marja; Suortti, Tapani; Schulman, Alan; Nuutila, Anna Maria. 2004. Genetic engineering of beta-glucan contents of oats. In: Proceedings of the 7th International Oat Conference / editors: Pirjo Peltonen-Sainio and Mari Topi-Hulmi. Maa- ja elintarviketalous, Agricultural Research Reports 51: s. 152.

B3 Non-refereed article in conference proceedings

Manninen, Outi; Erkkilä, Maria; Tenhola-Roininen, Teija; Tanskanen, Jaakko; Serenius, Marjo; Schulman, Alan; Jalli, Marja. 2012. 'Geeniä mä metsästän..' : miten löytää ja hyödyntää viljojen taudinkestävyysgeenejä? In: Maataloustieteen Päivät 2012, 10.-11.1.2012 Viikki, Helsinki : esitelmät, posterit / Toim. Nina Schulman ja Heini Kauppinen. Suomen maataloustieteellisen seuran tiedote 28: 4 p.

Schulman, Alan H. 2012. Genomics tools for accelerating plant breeding. In: Maataloustieteen Päivät 2012, 10.-11.1.2012 Viikki, Helsinki : esitelmät, posterit / Toim. Nina Schulman ja Heini Kauppinen. Suomen maataloustieteellisen seuran tiedote 28: 5 p.

Erkkilä, Maria; Kalendar, R.; Schulman, Alan. 2010. Traceability in Brassica species by DNA-markers. In: Plant breeding and management for human nutrition : how we can produce more healthful crops and food products? : NJF seminar 419, Forssa, Finland, 10-11 June 2010. NJF Report 6 2: 84-85.

Schulman, Alan. 2010. TriticeaeGenome: genomics for Triticeae improvement. In: Plant breeding and management for human nutrition : how we can produce more healthful crops and food products? : NJF seminar 419, Forssa, Finland, 10-11 June 2010. NJF Report 6 2: 136.

Schulman, Alan. 2010. Triticeae genomics for the advancement of essential European crops. In: Plant breeding and management for human nutrition : how we can produce more healthful crops and food products? : NJF seminar 419, Forssa, Finland, 10-11 June 2010. NJF Report 6 2: 135.

Schulman, Alan H. 2010. Genomic tools for grain improvement. In: Plant breeding and management for human nutrition : how we can produce more healthful crops and food products? : NJF seminar 419, Forssa Finland, 10-11 June 2010. NJF Report 6 2: 5.

Tanhuanpää, Pirjo; Manninen, Outi; Beattie, Aaron; Eckstein, Peter; Scoles, Graham; Rossnagel, Brian; Kalendar, Ruslan; Schulman, Alan; Eurola, Merja; Hietaniemi, Veli; Kiviharju, Elina. 2010. Genomic regions affecting B-glucan content in the doubled haploid oat progeny. In: Plant breeding and management for human nutrition : how we can produce more healthful crops and food products? : NJF seminar 419, Forssa, Finland, 10-11 June 2010. NJF Report 6 2: 94-96.

Antonius, Kristiina; Kalendar, Ruslan; Schulman, Alan. 2008. Lajikeaitouden määrittäminen DNA-tekniikalla. In: Maataloustieteen Päivät 2008, 10.-11.1.2008 [: esitelmät ja posterit] / Toim. Anneli Hopponen. Suomen maataloustieteellisen seuran tiedote 23: 1 p.

Antonius, Kristiina; Kalendar, Ruslan; Schulman, Alan. 2008. Lajikeaitouden määrittäminen DNA-tekniikalla. In: Maataloustieteen Päivät 2008, 10.-11.1. 2008, Viikki, Helsinki : esitelmäja posteritiivistelmät / Toim. Leena Rantamäki-Lahtinen. Suomen maataloustieteellisen seuran tiedote 24: p. 131.

Erkkilä, Maria; Kalendar, Ruslan; Schulman, Alan. 2008. Geenivirtatutkimus ristipölytteisillä kasveilla pelto-olosuhteissa. In: Maataloustieteen Päivät 2008, 10.-11.1.2008 [: esitelmät ja posterit] / Toim. Anneli Hopponen. Suomen maataloustieteellisen seuran tiedote 23: 4 p.

Erkkilä, Maria; Kalendar, Ruslan; Schulman, Alan. 2008. Geenivirtatutkimus ristipölytteisillä kasveilla pelto-olosuhteissa. In: Maataloustieteen Päivät 2008, 10.-11.1.2008, Viikki, Helsinki : esitelmäja posteritiivistelmät / Toim. Leena Rantamäki-Lahtinen. Suomen maataloustieteellisen seuran tiedote 24: p. 19.

Tanhuanpää, Pirjo; Manninen, Outi; Schulman, Alan; Kalendar, Ruslan; Eurola, Marja; Hietaniemi, Veli; Jalli, Marja; Pietilä, Leena; Kiviharju, Elina. 2008. Kauran jalostusominaisuuksiin vaikuttavien geenien paikantaminen. In: Maataloustieteen Päivät 2008, 10.-11.1.2008 [:esitelmät ja posterit] / Toim. Anneli Hopponen. Suomen maataloustieteellisen seuran tiedote 23: 7 p.

Antonius, Kristiina; Kalendar, Ruslan; Schulman, Alan. 2007. Retrotransposon markers for apple research. In: COST 864 WG2 meeting : Research Institute of Pomology and Floriculture SkierniewicePolandMay 31 - June 12007. p. 1-2.

Erkkilä, Maria; Kalendar, Ruslan; Mustonen, Leo; Pahkala, Katri; Peltonen-Sainio, Pirjo; Schulman, Alan H. 2006. Strategies for detection and control of gene flow and volunteers. In: NJF seminar 379 : Aspects of growing transgenic crops7-8 March 2006Denmark. 15-17.

Opsahl-Sorteberg, Hilde-Gunn; Rudi, Heidi; Lid, Stein Erik; Schulman, Alan H. 2005. Understanding developmental biology opens vast opportunities for designing novel feed and food - a discussion of potential new development of plant products. In: In the wake of the double helix from the green revolution to the gene revolution / Roberto Tuberosa (editor)Ronald L. Phillips (editor)Mike Gale (editor). Avenue media. 559-575.

D2 Article in professional manuals or guides or professional information systems or text book material

Keskitalo, Marjo; Känkänen, Hannu; Palojärvi, Ansa; Pennanen, Taina; Schulman, Alan; Tanhuanpää, Pirjo; Viitala, Sirja. 2022. 4. Biologiset prosessit kasvin typensaannin turvaajana. In: Maatalouden typpihaaste – vaihtoehtoja ja ratkaisuja : Synteesiraportti. Luonnonvara- ja biotalouden tutkimus 53/2022: 34-45.

D4 Published development or research report or study

Vainio, Eeva (Eds.) 2022. Maatalouden typpihaaste – vaihtoehtoja ja ratkaisuja : Synteesiraportti. Luonnonvara- ja biotalouden tutkimus 53/2022: 68 s. Luonnonvarakeskus (Luke)

Kiviharju, Elina (toim.); Ritala, Anneli (toim.); Schulman, Alan (toim.); Pietilä, Leena (toim.); Tanhuanpää, Pirjo (toim.). 2007. Biotekniikka kauran jalostuksessa. Uudet menetelmät laadun parantamiseksi. Maa- ja elintarviketalous 99: 76 s.

Heinonen, Kirsi; Tammisola, Jussi; Fieandt, Eeva; Helenius, Juha; Joensuu, Jussi; Kaiponen, Arja; Kostama, Outi; Palonen, Juha; Pulkkinen, Tuuli; Ruohonen-Lehto, Marja; Sahramaa, Mia; Salovuori, Irma; Schulman, Alan; Seppänen, Mervi; Tolonen, Tero; Törmäkangas, Kirsi; Vesanto, Erkki. 2005. Muuntogeenisten viljelykasvien sekä tavanomaisen ja luonnonmukaisen maataloustuotannon rinnakkaiselon mahdollistaminen Suomessa. MMM:n työryhmämuistio 2005:9: 84 p.

E1 Popularised article, newspaper article

Schulman, Alan H. 2011. Kasvinjalostus avuksi ruokakriisin ehkäisyssä. Helsingin sanomat 14.7.2011: A2.

Schulman, Alan; Ryhänen, Eeva-Liisa. 2007. Muuntogeenisen soijan hyödyt jääneet taka-alalle. Helsingin sanomat 24.8.2007:

Schulman, Alan. 2005. Kasvit muokkaavat itsekin omaa perimäänsä. Helsingin sanomat 22.10.2005:

M1 Texts about research activities

Manninen, Outi; Serenius, Marjo; Erkkilä, Maria; Tanskanen, Jaakko; Tiirikka, Timo; Schulman, Alan. 2010. Hunting candidates for the net blotch resistance gene Rpt5 in barley. In: Plant & Animal Genomes XVIII Conference : January 9-132010 Town & Country Convention CenterSan DiegoCA. 1 p.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Manninen, Outi. 2009. Genetic diversity in a collection of nordic timothy (Phleum pratense L.) accessions. In: Plant & animal genome XVIIthe international conference on the status of plant & animal genome researchJanuary 10-142009San DiegoCAUSA. p. 64.

Erkkilä, Maria; Kalendar, Ruslan; Schulman, Alan. 2007. Retrotransposon-based markers for detecting gene flow in Brassica species. In: Third international conference on coexistence between genetically modified (GM) and non-GM based agricultural supply chainsSeville (Spain)20th and 21st November 2007 / Alexander J. Stein (editor)Emilio Rodríguez-Cerezo. s. 247-248.

Kiviharju, Elina; Ritala, Anneli; Tanhuanpää, Pirjo; Kalendar, Ruslan; Oksman-Caldentey, Kirsi-Marja; Suortti, T; Manninen, Outi; Hietaniemi, Veli; Pietilä, Leena; Nuutila, Anna-Maria; Schulman, Alan. 2006. Biotechnology in improving oat beta-glucan content. In: Dietary fibre 2006 : Multifunctional complex of componentsJune 12-142006 / Kristiina Ahlgren (editor). p. 89-90.

Tanhuanpää, Pirjo; Manninen, Outi; Pietilä, Leena; Kalendar, Ruslan; Schulman, Alan; Kiviharju, Elina. 2006. A DH population for mapping quality traits in oats (Avena sativa L.). In: COST action 851: gametic cells and molecular breeding of crop improvementfinal workshopFebruary 10-112006Vienna. p. 24.

M2 Presentation or poster

Heinonen, Maarit; Kahala, Minna; Blasco, Lucia; Pihlava, Juha-Matti; Bitz, Lidija; Tanhuanpää, Pirjo; Schulman, Alan; Tenhola-Roininen, Teija. 2018. Suomalaisen ruishapanjuuren mikrobiston monimuotoisuus. 1. Luonnonvarakeskus

Tenhola-Roininen, Teija; Tanhuanpää, Pirjo; Bitz, Lidija; Kiviharju, Elina; Tanskanen, Jaakko; Viitala, Sirja; Schulman, Alan H. 2017. Genome Power for Rye.

Sculman, Alan. 2016. Capacity building for faba bean improvement. Nordic Association of Agricultural Scientists

Yaniv, E; Tanskanen, J; Törönen, P; Kalendar, R; Mishra, P; Kiviharju, E; Erkkilä, M; Tenhola-Roininen, T; Jalli, M; Doležel, J; Holm, L; Manninen, O; Schulman, AH. 2014. Fine-mapping of the Rpt5 net blotch resistance gene region in barley.

Zachepilo, T.G.; Kalendar, R.N.; Schulman, Alan; Valdo, A.I.; Dyuzhikova, N.A. 2014. Emotionally painful stress causes changes in L1 insertion pattern in the hippocampus in rats with different nervous system excitability. In: Abstracts of the 27th ECNP Congress 18 October 2014 - 21 October 2014. European Neuropsychopharmacology 24 Supplement 2: S163.

Schulman, Alan H. 2012. Genomics tools for accelerating plant breeding. In: Maataloustieteen Päivät 2012, 10.-11.1.2012 Viikki, Helsinki : esitelmä- ja posteritiivistelmät / Toim. Nina Schulman. Suomen maataloustieteellisen seuran tiedote 29: p. 12.

Tanhuanpää, Pirjo K.; Kalendar, Ruslan; Schulman, Alan H.; Manninen, Outi M. 2011. SSR and remap marker diversity in Nordic timothy (Phleum pratense L.). In: International plant and animal genome XIX conferenceJanuary 15-192011 Town & Country Convention CenterSan DiegoCalifornia. 1 p.

Tanhuanpää, Pirjo; Manninen, Outi; Beattie, Aaron; Eckstein, Peter; Scoles, Graham; Rossnagel, Brian; Kalendar, Ruslan; Schulman, Alan; Eurola, Merja; Hietaniemi, Veli; Pietilä, Leena; Kiviharju, Elina. 2011. The updated oat doubled haploid linkage map with QTL from Finnish and Canadian field trials. In: International plant and animal genome XIX conferenceJanuary 15-192011Town & Country Convention CenterSan DiegoCalifornia. 1 p.

Bevan, Michael W; Febrer, Melanie; Wright, Jon; Yang, Aidong; McKenzie, Neil; Haberer, Georg; Gundlach, Heidrun; Spannagl, Manuel; Schulman, Alan; Wicker, Thomas; Salse, Jerome; McCombie, W. Richard; Kersey, Paul; Birney, Ewan; Mayer, Klaus. 2010. Comparative analysis of the Brachypodium distachyon genome. In: International Plant & Animal Genome XVIII ConferenceJanuary 9-132010 Town & Country Convention CenterSan DiegoCA. 1 p.

Chang, Wei; Schulman, Alan H. 2010. Nonautonomous retrotransposon BARE2 are abundant, active and packaged into virus like particle. In: International Plant & Animal Genome XVIII ConferenceJanuary 9-132010 Town & Country Convention CenterSan DiegoCA. 1 p.

Feuillet, Catherine; Schulman, Alan; Lagendijk, Emmanuelle. 2010. The TriticeaeGenome project : genomics for Triticeae improvement. In: International Plant & Animal Genome XVIII ConferenceJanuary 9-132010 Town & Country Convention CenterSan DiegoCA. 1 p.

Schulman, Alan H.; COST Action FA0604 Partners. 2010. Tritigen : Triticeae genomics for the advancement of essential European crops. In: International Plant & Animal Genome XVIII ConferenceJanuary 9-132010 Town & Country Convention CenterSan DiegoCA. 1 p.

Tanhuanpää, Pirjo; Manninen, Outi; Beattie, Aaron; Eckstein, Peter; Scoles, Graham; Rossnagel, Brian; Kalendar, Ruslan; Schulman, Alan; Eurola, Merja; Hietaniemi, Veli; Jalli, Marja; Pietilä, Leena; Kiviharju, Elina. 2010. QTL for important breeding characteristics in the doubled haploid oat progeny. In: International Plant & Animal Genome XVIII ConferenceJanuary 9-132010 Town & Country Convention CenterSan DiegoCA : abstracts. 1 p.

Tanskanen, Jaakko A.; Mayer, Klaus; Schulman, Alan H. 2010. Fighting oobesity : how the Brachypodium genome stays small. In: International Plant & Animal Genome XVIII conferenceJanuary 9-132010 Town & Country Convention CenterSan DiegoCA. 1 p.

Antonius, Kristiina; Kolodiska-Brantestam, A.; Khairrullina, A.; Kuras, A.; Gajdosova, Alena; Kalendar, Ruslan; Schulman, Alan. 2009. Universal retrotransposon markers in fruit and berry research. In: International symposium on molecular markers in horticultureabstract bookJuly 29 - August 1 2009 CorvallisOregon. p. 11.

Moisy, Cédric; Kalendar, Ruslan; Kilby, Nigel; Tanskanen, Jaakko; Nissilä, Eero; Schulman, Alan. 2009. Towards high-throughput transposable element markers for barley. In: 19th International triticeae mapping initiative3rd COST tritigenClermont-FerrandFrance August 31st - September 4th 2009. p. 30.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Manninen, Outi. 2009. Nordic timothy (Phleum pratense L.) : assessing genetic variation in a genebank collection. In: XVIIth Meeting of the Eucarpia fodder crops and amenity grasses section: sustainable use of genetic diversity in forage crops and turf breedingLa Rochelle - France 11-14 May 2009. p. 45.

Tanhuanpää, Pirjo; Manninen, Outi; Schulman, Alan; Kalendar, Ruslan; Eurola, Merja; Hietaniemi, Veli; Jalli, Marja; Pietilä, Leena; Kiviharju, Elina. 2009. The doubled haploid map of hexaploid oat with QTLs for important breeding traits. In: Plant & animal genome XVIIthe international conference on the status of plant & animal genome researchJanuary 10-142009San DiegoCAUSA. p. 36.

Tanskanen, Jaakko; Moisy, Cédric; Yaniv, Elitsur; Paulin, Lars; Kalendar, Ruslan; Belcram, Harry; Charles, Mathieu; Chalhoub, Boulos; Fahima, Tzion; Schulman, Alan. 2009. Evolution of the Yr15 region in the Poideae. In: 19th international Triticeae Mapping Initiative -3rd COST TritigenClermont-FerrandFrance August 31st - September 4th 2009. p. 182.

Antonius, Kristiina; Kalendar, Ruslan; Schulman, Alan H. 2008. Microsatellite (SSR) and retrotransposon markers detecting clonal polymorphism in apple (Malus x domestica). In: First international symposium on biotechnology of fruit speciesSeptember 1-52008 in DresdenGermany. 111-112.

Antonius, Kristiina; Rokka, Veli-Matti; Tenhola-Roinen, Teija; Gajdosová, Alena; Kalendar, Ruslan; Schulman, Alan H. 2008. Monitoring clonal stability with retrotransposon-based markers. In: Cryopreservation of cropspecies in Europe : CRYOPLANET COST Action 87120th-23rd of February 2008, Oulu, Finland / Jaana Laamanen, Marjatta Uosukainen, Hely Häggman, Anna Nukari and Saija Rantala (eds.). Agrifood Research Working papers, MTT:n selvityksiä 153: s. 50.

Chang, W.; Jääskeläinen, Marko; Kalendar, Ruslan; Tanskanen, Jaakko; Schulman, Alan H. 2008. The role of retrotransposons in genome dynamics over gradients of space and time. In: 7th plant GEM Albena 2008.Plant genomics European meetings 24-27 September AlbenaBulgaria / A.I. Atanassov (editor)N.K. Christov (editor)K. Rusanov (editor)E.G. Todorovska (editor). p. 127.

Kalendar, Ruslan; Vuorinen, A. L.; Fahima, T.; Korpelainen, H.; Eviatar, N.; Schulman, Alan H. 2008. Use of retrotransposon markers to analyse genetic diversity of wild emmer wheat (Triticum dicoccoides). In: Triticeae genomics for the advancement of essential European crops. Proceedings of the 2nd workshop TritiGen COST action FA0604September 22-242008 AlbenaBulgaria / N.K. Christov (editor)E.G. Todorovska (editor). p. 37.

Manninen, Outi; Serenius, Marjo; Jalli, Marja; Schulman, Alan. 2008. Durable resistance to net blotch of barley. In: The 10th International Barley Genetics Symposium AlexandriaEgypt 5-10 April 2008. [p. session 7-1].

Manninen, Outi; Serenius, Marjo; Jalli, Marja; Schulman, Alan. 2008. Genomiikkatyökalut ohran geenivarojen hyödyntämisessä: verkkolaikunkestävyys. In: Suomen Kansallinen Kasvigeenivaraohjelmasuojelutyön tukena 2003-2008 / Merja Veteläinen (toim.). MTT:n selvityksiä 165: s. 51.

Manninen, Outi; Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Pietilä, Leena; Kiviharju, Elina. 2008. QTLs associated with quality traits in oat DH mapping population. Options Méditerranéennes 81: p. 127.

Tanhuanpää, Pirjo; Isolahti, Mika; Nissinen, Oiva; Pärssinen, Pertti; Kalendar, Ruslan; Schulman, Alan; Manninen, Outi. 2008. Identification of DNA markers for gray snow mold resistance in timothy, Phleum pratense, using bulked segregant analysis. In: Molecular mapping & marker assisted selection in plantsViennaAustria 3-6 February 2008. p. 68.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Kiviharju, Elina. 2008. A major gene for grain cadmium accumulation in oat (Avena sativa L.). In: NJF Seminar 410 : Risk Assessment of Global Agrifood Production Chains - NJF's 90 Year Jubilee Symposium, Helsinki, Finland, 5-6 November 2008 / Edited by Kirsi Partanen and Oiva Niemeläinen. NJF Report 4 7: 88.

Tanhuanpää, Pirjo; Kiviharju, Elina; Manninen, Outi; Schulman, Alan; Kalendar, Ruslan; Eurola, Merja; Hietaniemi, Veli; Jalli, Marja; Pietilä, Leena. 2008. QTLs associated with breeding characteristics in oat DH mapping population. In: IOC 2008MinneapolisMNJune 28 - July 22008. 1 p.

Tanhuanpää, Pirjo; Manninen, Outi; Schulman, Alan; Kalendar, Ruslan; Eurola, Marja; Hietaniemi, Veli; Jalli, Marja; Pietilä, Leena; Kiviharju, Elina. 2008. Kauran jalostusominaisuuksiin vaikuttavien geenien paikantaminen. In: Maataloustieteen Päivät 2008, 10.-11.1.2008, Viikki, Helsinki : esitelmä- ja posteritiivistelmät / Toim. Leena Rantamäki-Lahtinen. Suomen maataloustieteellisen seuran tiedote 24: p. 208.

Yaniv, Elitsur; Tanskanen, Jaakko A.; Kalendar, Ruslan; Schulman, Alan H.; Fahima, T. 2008. Towards positional cloning of the stripe rust resistance gene YR15, derived from wild emmer wheat. In: Triticeae genomics for the advancement of essential European crops. Proceedings of the 2nd workshop TritiGen COST action FA0604September 22-242008 AlbenaBulgaria / N.K. Christov (editor)E.G. Todorovska (editor). p. 54.

Antonius, Kristiina; Kalendar, Ruslan; Schulman, Alan. 2007. Retrotransposon markers for apple research. In: II Vavilov international conference 26-30 November 2007 : genetic resources of cultivated plants in XXI centurySt. Petersburg 2007. p. 380.

Erkkilä, Maria; Kalendar, Ruslan; Schulman, Alan. 2007. Retrotransposon -based markers for detecting gene flow in Brassica species. In: Plant GEM 6 : plant genomics European meeting3-6 october 2007. p. 187.

Erkkilä, Maria; Pahkala, Katri; Kalendar, Ruslan; Mustonen, Leo; Peltonen-Sainio, Pirjo; Schulman, Alan. 2007. Go with the flow, or volunteer later : is there room for GM oilseed and potato in Finland? In: Research programme on environmentalsocietal and health effects of genetically modified organisms : Final symposium of the ESGEMO projectsTvärminne Zoological StationHanko November 5-62007. [p. 13-14].

Kiviharju, Elina; Ritala, Anneli; Tanhuanpää, Pirjo; Kalendar, Ruslan; Manninen, Outi; Suortti, T.; Hietaniemi, Veli; Pietilä, Leena; Oksman-Caldentey, Kirsi-Marja; Nuutila, Anna-Maria; Schulman, Alan. 2007. Improving oat b-glucan content by biotechnological methods. In: VTT symposium 249 : PSE congress : plants for human health in the post-genome eraAugust 26-292007 Rantapuisto Congress CentreHelsinkiFinland / Annemari Kuokka-Ihalainen (editor)Kirsi-Marja Oksman-Caldentey (editor)Heiko Rischer (editor) Anneli Ritala (editor). p. 120.

Manninen, Outi; Jalli, Marja; Kalendar, Ruslan; Schulman, Alan; Afanasenko, Olga; Robinson, Jonathan. 2007. Major spot type and net type net blotch resistance genes in the ethiopian barley lin CI 9819. In: Proceedings of the 1st workshop on TritiGenCOST action FA0604 : Triticeae genomics for the advancement of essential European cropsoctober 1-32007 Puerto de la CruzTenerife Canary IslandSpain. p. 44.

Rokka, Veli-Matti; Wei, C; Middlefell-Williams, Jill; Harwood, W; Erkkilä, Maria; Tanhuanpää, Pirjo; Manninen, Outi; Schulman, Alan. 2007. Agrobacterium-mediated transformation of barley using retrotransposon promoters. In: Plant transformation technologiesViennaAustria 4-7 February 2007. p. 27.

Stein, N.; Close, T.; Langridge, P.; Matsumoto, T.; Sato, K.; Schulman, Alan; Waugh, R.; Wise, R.; Graner, A. 2007. The international barley sequencing consortium (IBSC) - progress towards efficient gene isolation and genomic sequencing in barley. In: Proceedings of the 1st workshop on TritiGenCOST action FA0604 : Triticeae genomics for the advancement of essential European cropsoctober 1-32007 Puerto de la CruzTenerife Canary IslandsSpain. p. 59.

Stein, Nils; Close, Tim; Langridge, Peter; Matsumoto, Takashi; Sato, Kazuhiro; Schulman, Alan; Waugh, Robbie; Wise, Roger; Graner, Andreas. 2007. The international barley sequencing consortium (IBSC) - progress towards efficient gene isolation and genomic sequencing in barley. In: Plant GEM 6 : plant genomics European meeting3-6 october 2007Tenerife. p. 115.

Tanhuanpää, Pirjo; Manninen, Outi; Kiviharju, Elina; Schulman, Alan; Kalendar, Ruslan; Pietilä, Leena. 2007. Oat linkage mapping with androgenetic DH lines. In: Plant GEM 6 : plant genomics European meeting3-6 october 2007Tenerife. p. 93.

Erkkilä, Maria; Kalendar, Ruslan; Pahkala, Katri; Mustonen, Leo; Peltonen-Sainio, Pirjo; Schulman, Alan. 2006. GMOs and genetic contamination: tools and practices for Brassica and Solanum under Finnish condition. In: 5. Plant genomics European meetingsVenice11-14th October 2006. p. 347.

Kalendar, Ruslan; Gu, Y. C.; Schulman, Alan. 2006. Transposable elements in Brachypodium: implications for genome organization and molecular marker development. In: 5. Plant genomics European meetingsVenice11-14th October 2006. p. 82.

Kalendar, Ruslan; Tanskanen, Jaakko; Chang, Wei; Sela, H.; Antonius-Klemola, Kristiina; Bolshoy, A.; Schulman, Alan. 2006. Cassandra: a TRIM retrotransposon that carries independently transcribed 5S RNA. In: 5. Plant genomics European meetingsVenice11-14th October 2006. p. 209.

Kiviharju, Elina; Tanhuanpää, Pirjo; Manninen, Outi; Kalendar, Ruslan; Schulman, Alan. 2006. Identification of DNA markers associated with cadmium accumulation in oat. In: EucarpiaNovember 13 to 172006LleidaSpain. p. 167.

Manninen, Outi; Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Pietilä, Leena; Kiviharju, Elina. 2006. QTLs associated with quality traits in oat DH mapping population. In: EucarpiaNovember 13 to 172006LleidaSpain. p. 104.

Ritala, Anneli; Suortti, T; Kalendar, Ruslan; Salmenkallio-Marttila, Marjatta; Oksman-Caldentey, Kirsi-Marja; Schulman, Alan; Nuutila, Anna-Maria. 2006. Modifying beta-glucan content of oat by genetic engineering. In: 8th international congress of plant molecular biology (ISPMB)AdelaideAustralia20-25 August 2006. p. 111.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Schulman, Alan; Kiviharju, Elina. 2006. Uncovering of a major gene for grain cadmium accumulation in oat. In: 5. Plant genomics European meetingsVenice11-14th October 2006. p. 301.

Tanhuanpää, Pirjo; Manninen, Outi; Kalendar, Ruslan; Schulman, Alan; Pietilä, Leena; Kiviharju, Elina. 2006. The first oat linkage map constructed using androgenetic DH lines. In: 5. Plant genomics European meetingsVenice11-14th October 2006. p. 300.

Tanhuanpää, Pirjo; Manninen, Outi; Pietilä, Leena; Kalendar, Ruslan; Schulman, Alan; Kiviharju, Elina. 2006. A DH population for mapping quality traits in oats (Avena sativa L.). In: The international conference Haploids in higher plants IIIVienna-AustriaFebruary 12-152006. p. 30, p.24.

Antonius-Klemola, Kristiina; Sahramaa, Mia; Kalendar, Ruslan; Schulman, Alan. 2005. DNA-fingerprinting Finnish apple cultivars with SSR- and IRAP/REMAP-markers. In: NeoBio technology programme and drug 2000 technology programme : BioFinlandposters26.-28.4.2005. TEKES. p. 7.

Erkkilä, Maria; Kalendar, Ruslan; Pahkala, Katri; Mustonen, Leo; Peltonen-Sainio, Pirjo; Schulman, Alan. 2005. GMOs and genetic contamination : tools and practices for Brassica and Solanum under Finnish conditions. In: ProceedingsSecond International Conference on Co-existence between GM and non-GM based agricutural supply chains14-15 November 2005MontpellierFrance / ed. Antoine Messéan. p. 253.

Ritala, Anneli; Tanhuanpää, Pirjo; Holkeri, H.; Kalendar, Ruslan; Salmenkallio-Marttila, Marjatta; Suortti, T.; Sarén, Ari-Matti; Pietilä, Leena; Kiviharju, Elina; Oksman-Caldentey, Kirsi-Marja; Nuutila, Anna-Maria; Schulman, Alan H. 2005. Quality breeding of oat. In: Biotechnology Havana 2005 : For Sustainable Food Production. HavanaCuba27.11.-2.12.05. p.147.

Sabot, F.; Kalendar, Ruslan; Chang; Tanskanen, Jaakko; Jääskeläinen, Marko; Schulman, Alan H. 2005. Parasites of parasites : non-autonomous retrotransposons and the shaping of the barley genome. In: Plant GEMs 4AmsterdamThe Netherlands20.-23.9.05. p. 121.

Sabot, F.; Schulman, Alan H. 2005. Structure secondaire de LARDs et identification de leurs partenaires actifs. In: XIIIPme colloque : Éléments Transposables4.-6.7.05. p. 10.

Sarén, Ari-Matti; Tanskanen, Jaakko; Paulin, Lars; Schulman, Alan H. 2005. Genomic analysis of barley embryogenesis. In: Functional genomics of gametic embryogenesis : COST action 851 : gametic cells and molecular breeding for crop improvementMay 27-282005CopenhagenDenmark. p. 20.

Zhuk, A; Kalendar, Ruslan; Schulman, Alan H.; Sjakste, T.G. 2005. A multi-retrotransposon approach to the study of genetic diversity of Latvian barley varieties. In: 8th Gatersleben Research ConferenceGaterslebenGermany 2.-6.6.05. [p. 120].

Antonius-Klemola, Kristiina; Kalendar, Ruslan; Sahramaa, Mia; Schulman, Alan. 2004. Retrotransposon (TRIM) base markers reveal genetic diversity in Malus and other Rosaceae. In: Genetic variation for plant breeding : proceedings of the 17th EUCARPIA General Congress8-11 September 2004Tulln - Austria / Editors: Johann VollmannHeinrich Grausgruber and Peter Ruckenbauer. EUCARPIA & BOKU - University of Natural Resources and Applied Life Sciences. p. 167.

Druka, Amis; Muehlbauer, Gary; Caldo, Rico; Wise, Roger; Close, Timothy; Kleinhofs, Andris; Graner, Andreas; Schulman, Alan; Langridge, Peter; Sato, Kazuhiro; Hayes, Patrick; Marshall, David; Waugh, Robbie. 2004. Parallel gene expression analysis in cereal development. In: Plant & Animal Genome XII : the international conference on the status of plant & animal genome researchJanuary 10-142004San DiegoCA. p. 266.

Kalendar, Ruslan; Kumar, Amar; Peleg, Ofer; Mudie, Sharon; Thomas, Bill; Vicient, Carlos; Waugh, Robbie; Bolshoy, Alex; Schulman, Alan. 2004. TRIMs and LARDs : widespread, insertionally polymorphic, but nonautonomous classes of retroelements. In: Plant & Animal Genome XII : the international conference on the status of plant & animal genome researchJanuary 10-142004San Diego CA. p. 174.

Law, John; Leigh, Fiona; Donini, Paolo; Foerster, Jutta; Schulman, Alan; Cooke, Robert; van Eeuwijk, Fred; Reeves, James. 2004. Statistical approaches to the assessement of essential derviation in barley. In: Plant & Animal Genome XII : the international conference on the status of plant & animal genome researchJanuary 10-142004San Diego CA. p. 126.

Tanhuanpää, Pirjo; Kalendar, Ruslan; Manninen, Outi; Pietilä, Leena; Laurila, Jaana; Schulman, Alan; Kiviharju, Elina. 2004. Development of SNP markers for the oat dwarfing gene Dw6. In: Genetic variation for plant breeding : proceedings of the 17th EUCARPIA general congress8-11 September 2004Tulln - Austria / Editors: Johann VollmannHeinrich Grausgruber and Peter Ruckenbauer. p. 315.

Tenhola-Roininen, Teija; Kalendar, Ruslan; Schulman, Alan; Tanhuanpää, Pirjo. 2004. Construction of a linkage map using a rye doubled haploid population. In: Genetic variation for plant breeding : Proceedings of the 17th EUCARPIA General Congress8-11 September 2004Tulln-Austria / ed. Johann VollmanHeinrich GrausgruberPeter Ruckenbauer. p. 306.

Erkkilä, Maria; Schulman, Alan H.; Sarén, Ari-Matti; Manninen, Outi. 2003. Development of SNP and SSR markers based on barley EST sequences related to plant defense. In: 12th Meeting of the eucarpia section of biometrics in plant breeding : integrated quantitative and molecular genetics in plant breedingSeptember3-52003A CoruñaSpain. p. 58.

Sarén, Ari-Matti; Tanskanen, Jaakko; Paulin, L.; Schulman, Alan. 2003. Production of EST tools for barley gene discovery and exploitation. In: In the wake of the double helix : from the green revolution to the gene revolution : Bologna - ItalyMay 27-312003. p. 107.

Kalendar, Ruslan; Vicient, Carlos M.; Peleg, Ofer; Anamthawat-Jonsson, Kesara; Bolshoy, Alexander; Schulman, Alan H. 2002. LARD retroelements: Novel, non-autonomous components of barley and related genomes. In: Retrotransposons: Their impact on organismsgenomesand biodiversity. p. 7.

Schulman, Alan H. 2002. Tracing genome evolution with retrotransposon-based molecular markers. In: The 6th International Conference on Ancient DNA & Associated Biomolecules : Israel2002. p. 64.

Schulman, Alan H.; Kalendar, Ruslan; Vicient, Carlos M. 2002. Dynamic DNA and genome evolution. In: Plant Biology 2002 : Symposium V-Dynamic Processes : DenverUSA. p. 7.

Tenhola, Teija; Schulman, Alan; Tanhuanpää, Pirjo. 2002. Identification of DNA markers linked to the dwarf (Ddw1) gene. In: Application of Molecular Markers in Studies on PlantsInternational Workshop 25-29 September2002 WarsawPoland. p. 40.

Sarén, Ari-Matti; Tanskanen, Jaakko; Schulman, Alan. 2001. Production of EST tools for barley gene discovery and exploitation. In: Plant & Animal Genome IX 2001. p. 67.

Schulman, Alan. 2001. Production of est tools for barley discovery and exploitation. In: NEOBIO - Novel BiotechnologySeminar program and project abstracts. p. 15.

Schulman, Alan. 2001. Retrotransposon families and barley genome organization. In: ESF Scientific NetworkRetrotransposons: their impact on organismsgenomesand biodiversity.

Tenhola, Teija; Ramstedt, Leena; Mäkelä, Marja-Riitta; Schulman, Alan; Tanhuanpää, Pirjo. 2001. Tagging of the dwarf (Ddw1) gene. In: Proceedings of the EUCARPIA rye meeting: July 4-7 2001Radzików05-870 BloniePoland. p. 377-378.

Vicient, Carlos; Kalendar, Ruslan; Schulman, Alan. 2001. Env-containing retrovirus-like elements are widely present and expressed in plants. In: ESF NetworkRetrotransposons: their impact on organismsgenomesand biodiversity.

Vicient, Carlos; Kalendar, Ruslan; Schulman, Alan. 2001. Retrovirus endógenos: elementos abundantes y activos en el genoma de las plantas. In: VI Reunión de Biología Molecular de Plantas 2001. p. 56.

Vicient, Carlos; Tanskanen, Jaakko; Shirasu, Ken; Schulze-Lefert, Paul; Schulman, Alan. 2001. Retrotransposons and genome organization in barley. In: The International Conference on the Status of Plant & Animal Genome Research. p. 36.

Manninen, Outi; Jalli, Marja; Kalendar, Ruslan; Schulman, Alan; Afanasenko, Olga; Robinson, Jonathan. 2000. Genetic mapping of major and minor resistance genes in barley against an array of Pyrenophora teres Drechs. f. teres Smedeg. isolates. In: Durable disease resistance : book of abstracts : Symposium Ede - WageningenThe NetherlandsNovember 28 - December 12000. p. 83.